PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen05g032160.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 382aa    MW: 43271.6 Da    PI: 4.9963
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen05g032160.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.22.6e-12165216155
                       CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +r++h ++Er+RR+++N+ +  Lr+l+P +   + ++ + a+i   A+e++++L+
  Sopen05g032160.1 165 QRMTHIAVERNRRKQMNEHLRVLRSLMPGS---YVQRGDQASIIGGAIEFVRELE 216
                       79****************************...9*****************9995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.61E-12163220No hitNo description
Gene3DG3DSA:4.10.280.101.3E-13163219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.428164215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-16164230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-9165216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-9170221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00301304368No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010377Biological Processguard cell fate commitment
GO:0045597Biological Processpositive regulation of cell differentiation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051782Biological Processnegative regulation of cell division
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MEKEENCQAN TLPTSFQMAI IGESSSNNTN NQMVDYMVNS QSIQQQQHNQ SSLGFLPSNP  60
SLDKLSFADV MQFADFGPKL ALNQTKVLEQ DVGIDDPVYF LKFPVLNEKK NDNDNDDDHE  120
EGLMISGGKE KGENNNNIVE KNQEGKSNNK RKRPRIKTSE EVESQRMTHI AVERNRRKQM  180
NEHLRVLRSL MPGSYVQRGD QASIIGGAIE FVRELEQLLQ CLESQKRRRI YGDTPTRPLG  240
DSSTPPSMPM NQNPNAINPH HHQSPILFPL PNEYNIEDEI QEEVAESKSC LADVEVKLLG  300
FDAMIKILSR RRPGQLIKAI AALEDMQLSI LHTNITTIEQ TVLYSFNVKI SGETRYTADD  360
IANSIQQIFS FIHAEIAPYD IN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1165176RMTHIAVERNRR
2225229KRRRI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015074929.10.0PREDICTED: transcription factor FAMA-like
RefseqXP_015074930.10.0PREDICTED: transcription factor FAMA-like
SwissprotQ56YJ81e-132FAMA_ARATH; Transcription factor FAMA
TrEMBLM1BAD10.0M1BAD1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000407610.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46572341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24140.11e-107bHLH family protein